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Publications dans revues indéxées

Autres Productions

2023

2022

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  • Barouillet C., Vasselon V., Keck F., Millet L., Etienne D., Galop D., Rius D., Domaizon I. 2022. Paleoreconstructions of ciliate communities reveal long-term ecological changes in temperate lakes. Scientific Reports 12:7899 https://doi.org/10.1038/s41598-022-12041-7

  • Hervé A., Domaizon I, Baudoin J-M, Dejean T, Gibert P, Jean P, et al. (2022) Spatio-temporal variability of eDNA signal and its implication for fish monitoring in lakes. PLoS ONE 17(8): e0272660. https://doi.org/10.1371/journal.pone.0272660

  • Riccioni G., Domaizon I., Gandolfi, A., Pindo, M., Boscaini, A.,  Vautier, M., Rund, H., Hufnagl, P., Dobrovolny, S., Vasselon, V.,  Bylemans, J., Tang, C. Q. ., Salmaso, N., & Wanzenböck, J. (2022).  Alpine freshwater fish biodiversity assessment: an inter-calibration  test for metabarcoding method set up. Advances in Oceanography and Limnology, 13(1).

  • 13(1).  https://doi.org/10.4081/aiol.2022.10017

  • Gauthier J. et al 2022. Sedimentary DNA of a human-impacted lake in Western Canada (Cultus Lake) reveals changes in micro-eukaryotic diversity over the past ~200 years. Environmental DNA. https://doi.org/10.1002/edn3.310

  • Barouillet, C; Monchamp, ME; Bertilsson, S; Brasell, K; Domaizon, I; Epp, LS; Ibrahim, A; Mejbel, H; Nwosu, EC; Pearman, JK; Picard, M; Thomson-Laing, G; Tsugeki, N; Von Eggers, J; Gregory-Eaves, I; Pick, F; Wood, SA; Capo, E (2022) nvestigating the effects of anthropogenic stressors on lake biota using sedimentary DNA. Freshwater Biology, https://doi.org/10.1111/fwb.14027

  • Capo E., Monchamp M-E, Coolen M.J., Domaizon I., Armbrecht L, Bertilsson S. 2022 Environmental paleomicrobiology: using DNA preserved in aquatic sediments to its full potential. Environmental Microbiology. https://doi.org/10.1111/1462-2920.15913

  • Rivera S., Rimet F., Vasselon V., Vautier I., Domaizon I., Bouchez A. 2022.  Fish eDNA metabarcoding from aquatic biofilm samples: Methodological aspects. Molecular Ecology Resources. https://doi.org/10.1111/1755-0998.13568

  • Salmaso N., V. Vasselon, F. Rimet, M. Vautier, T. Elersek, A. Boscaini, C. Donati, M. Moretto, M. Pindo, G. Riccioni, E. Stefani, C. Capelli, F. Lepori, R. Kurmayer, U. Mischke, A. K. Klemenčič, K. Novak, C. Greco, G. Franzini, G. Fusato, F. Giacomazzi, A. Lea, S. Menegon, C. Zampieri, A. Macor, D. Virgilio, E. Zanut, R. Zorza, F. Buzzi, & I. Domaizon, 2022. DNA sequence and taxonomic gap analyses to quantify the coverage of aquatic cyanobacteria and eukaryotic microalgae in reference databases: Results of a survey in the Alpine region. STOTEN 834, 155175. https://doi.org/10.1016/j.scitotenv.2022.155175

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  • Vautier M., Chardon C., Goulon C., Guillard J., Domaizon* I. 2023 A quantitative eDNA-based approach to monitor fish spawning in lakes: Application to European perch and whitefish. Fisheries Research  DOI: 10.1016/j.fishres.2023.106708

  • Desgues Itier O., et al  2023 Past and future climate change effects on the thermal regime and oxygen solubility of four peri-alpine lakes. Hydrology and Earth System Sciences 2 (3). DOI : 10.5194/hess-27-837-2023

  • Canino A., Lemonnier C., Alric B., Bouchez A., Domaizon I., Laplace-treyture C., Rimet F. 2023  Which barcode to decipher freshwater microalgal assemblages? Tests on mock communities. International Journal of Limnology 5(8). DOI: 10.1051/limn/2023008

  • Salmaso, N., Bernabei, S., Boscaini, A. et al. Biodiversity patterns of cyanobacterial oligotypes in lakes and rivers: results of a large-scale metabarcoding survey in the Alpine region. Hydrobiologia (2023). https://doi.org/10.1007/s10750-023-05423-z

2021

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  • Barouillet C., Vasselon V., Keck F., Millet L., Etienne D., Galop D., Rius D., Domaizon I. 2021 Changes in Ciliate Communities Reveal Modification of Lake Functioning Over the Last Century. Preprint DOI 10.21203/rs.3.rs-1126972/v1

  • Monchamp M-E, Armbrecht L, Capo E, Coolen MJL, Cordier T, Domaizon I, Epp LS, Giguet-Covex C, Gregory-Eaves I, Herzschuh U, Parducci L, Stoof-Leichsenring KR and Williams JW (2021) PaleoEcoGen: Unlocking the power of ancient environmental DNA to understand past ecological trends, Past Global Changes Magazine, 29(2), 102

  • Canino A., Bouchez A., Laplace-Treyture C., Domaizon I., Rimet F. 2021. Phytool, a ShinyApp to homogenise taxonomy of freshwater microalgae from DNA barcodes and microscopic observations Metabarcoding and Metagenomics 5: e74096. https://doi.org/10.3897/mbmg.5.74096

  • Ezzedine J.A., Janicot A., Rasconi S., Domaizon I., Jacquet S. 2021 Short-Term Dynamics of Bdellovibrio and Like Organisms in Lake Geneva in Response to a Simulated Climatic Extreme Event. Microbial Ecology. https://doi.org/10.1007/s00248-021-01875-9

  • Gauthier J., Walsh D., Selbie D.T., Bourgeois A., Griffiths K., Domaizon I., Gregory-Eaves I. 2021 Evaluating the congruence between DNA-based and morphological taxonomic approaches in water and sediment trap samples. Limnology & Oceanography  66(8) 3020:3039. https://doi.org/10.1002/lno.11856

  • Capo E. et al.  2021 Lake Sedimentary DNA Research on Past Terrestrial and Aquatic Biodiversity: Overview and Recommendations. Quaternary 4, 6. https://doi.org/10.3390/quat4010006

  •  Bouvy M., Dupuy C., Got P.,  Domaizon I., C et al. 2021 Rapid responses of pristine marine planktonic communities in experimental approach to diuron and naphthalene (Juan de Nova Island, Western Indian Ocean). Marine and Freshwater Research. 72(7) 1065-1085. https://doi.org/10.1071/MF20276

  • Lyautey, E., Billard, E., Tissot, N., Jacquet S., Domaizon I. 2021. Seasonal Dynamics of Abundance, Structure, and Diversity of Methanogens and Methanotrophs in Lake Sediments. Microb Ecol https://doi.org/10.1007/s00248-021-01689-9

  • Capo E.,  Nines S, Domaizon I, Bertilsson S. et al 2021. Community Structure in Four Swedish Mountain Lakes over the Holocene. Microorganisms  9(2), 355; https://doi.org/10.3390/microorganisms9020355

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  • Keck F., Millet L., Debroas D., Etienne D., Galot D., Rius D., Domaizon* I. 2020 Assessing the response of micro-eukaryotic diversity to the Great Acceleration using sedimentary DNA. Nature Communications 11, 3831. https://doi.org/10.1038/s41467-020-17682-8

  • Singer D., Seppey C., Letendu G., Dunthorn M, Bass D, Belbahri L., Blandenier Q, Debroas D, de Groot G A., de Vargas C., Domaizon I., Duckert C, et al, & Lara E. (2020) Protist taxonomic and functional diversity in soil, freshwater and marine ecosystems. Environment International Volume 146, https://doi.org/10.1016/j.envint.2020.106262.

  • Jenny J.P., Anneville O., Arnaud F., Baulaz Y., Bouffard D.,  Domaizon I.,  et al. 2020 Scientists’ Warning to Humanity: Rapid degradation of the world’s large lakes. Journal of Great Lakes Research. https://doi.org/10.1016/j.jglr.2020.05.006

  • Rimet F., Anneville O., Barbet D., Chardon C., Crépin L.,  Domaizon D., et al. 2020  The Observatory on LAkes (OLA) database: Sixty years of environmental data accessible to the public. Journal of Limnology https://doi.org/10.4081/jlimnol.2020.1944

2020

2019

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  • Barrow J., Beisner B., Gilles R.H., Gianni A., Domaizon I., Gregory-Eaves I. (2019) Macrophytes moderate the taxonomic and functional composition of phytoplankton assemblages during a nutrient loading experiment. Freshwater Biology DOI:10.1111/fwb.13311

  • Vasselon V., Rimet F., Domaizon I., Monnier O., Reyjol Y., Bouchez A. (2019) Assessing pollution of aquatic environments with diatoms' DNA metabarcoding : experience and developpement from france water framework directive networks. Metabarcoding & Metagenomics. 3: e39646. https://doi.org/10.3897/mbmg.3.39646

  • Lepère C., Domaizon I, Humbert JF, Jardillier L, Hugoni M, Debroas D. (2019) Diversity, spatial distribution and activity of fungi in freshwater ecosystems. PeerJ 7:e6247 http://doi.org/10.7717/peerj.6247

  • Capo E., Rydberg J, Tolu J, Domaizon I, Debroas D, Bindler R, Bigler C (2019) How Does Environmental Inter-annual Variability Shape Aquatic Microbial Communities? A 40-Year Annual Record of Sedimentary DNA From a Boreal Lake (Nylandssjön, Sweden). Frontiers in Ecology and Evolution 7:245 DOI=10.3389/fevo.2019.00245  

  • Metz S, Singer D, Domaizon I, Unrein F, Lara E (2019) Global distribution of Trebouxiophyceae diversity explored by high-throughput sequencing and phylogenetic approaches. Environmental Microbiology    DOI:10.1111/1462-2920.14738

2018

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  • Vasselon V., A. Bouchez, F. Rimet, S. Jacquet, R. Trobajo, M. Corniquel, K.Tapolczai & I. Domaizon (2018) Avoiding quantification bias in metabarcoding: Application of a cell biovolume correction factor in diatom molecular biomonitoring. Methods in Ecology and Evolution, 9(4): 1060-1069.

  • Pawlowski J., et al. (2018) The future of biotic indices in the ecogenomic era: Integrating (e)DNA metabarcoding in biological assessment of aquatic ecosystems. STOTEN 637-638 : 1295-1310

  • Lefrancois E. et al (2018) Development and implementation of eco-genomic tools for aquatic
    ecosystem biomonitoring: the SYNAQUA French-Swiss program.     Environmental Science and Pollution Research. https://doi.org/10.1007/s11356-018-2172-2

  • Monchamp, ME., Spaak, P., Domaizon, I., Dubois, N., Bouffard, D., Pomati, F., (2017). Homogenization of lake cyanobacterial communities over a century of climate change and eutrophication. Nature Ecology & Evolution. DOI: 10.1038/s41559-017-0407-0

2017

  • Domaizon I., Winegardner A, Capo E, Gauthier J, I Gregory-Eaves (2017) DNA-based methods in paleolimnology: new opportunities for investigating long-term dynamics of lacustrine biodiversity. J. of paleolimnology, 58(1): 1-21. DOI 10.1007/s10933-017-9958-y

  • Capo E, Domaizon I.*, Maier D., Debroas D., Bigler C. (2017) To what extent is the DNA of microbial eukaryotes modified during burying into lake sediments? A repeat-coring approach on annually laminated sediments J. of paleolimnology 58 (4), 479-495 DOI: 10.1007/s10933-017-0005-9

  • Capo E, Debroas D., Arnaud F, Perga ME, Chardon C, Domaizon I.  (2017) Tracking a century of changes in microbial eukaryotic diversity in lakes driven by nutrient enrichment and climate warming. Environmental Microbiology, 19(7):2873-2892 DOI: 10.1111/1462-2920.13815

  • Leach, T.H., B.E. Beisner, C.C. Carey, P. Pernica, K.C. Rose, Y. Huot, J.A. Brentrup, I. Domaizon, et al. (2017) Patterns and drivers of deep chlorophyll maxima structure in 100 lakes: the relative importance of light and thermal stratification. Limnology and Oceanography, DOI: 10.1002/lno.10656

  • Debroas D., Domaizon I., Humbert J F, Jardillier L, Lepère C, et al. (2017) Overview of freshwater microbial eukaryotes diversity : a first analysis of publicly available metabarcoding data. FEMS Microbiology ecology, 93(4)  Doi.org/10.1093/femsec/fix023

  • Kamenova S., Bartley TJ, Bohan D, Boutain JR, Colautti RI, Domaizon I, et al. (2017) Invasions toolkit: current methods for tracking the spread and impact of invasives species. Advances in Ecological research 56 DOI: 10.1016/bs.aecr.2016.10.009

  • Vasselon V., Domaizon I., Rimet, F, Kahlert M, Bouchez A (2017)  Application of high-throughput sequencing (HTS) metabarcoding to diatom biomonitoring: Do DNA extraction methods matter? Freshwater Science DOI: 10.1086/690649

HDR

(2010) Domaizon I:  Les réseaux trophiques microbiens planctoniques : diversité, structure, fonctionnement en milieu lacustre    HDR ‘Biodiversité’ - Univ de Savoie

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PAGES Working group : PaleoEcoGen

MonChmap et al 2021. PaleoEcoGen: Unlocking the power of ancient environmental DNA to understand past ecological trends

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SedaDNA society

Capo et al 2021. Unifying the sedaDNA scientists 

EGU21. https://doi.org/10.5194/egusphere-egu21-4697

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DATA SETS

(2023)

Tran-Khac V, et al 2023. Physico-chemical and high frequency monitoring dataset from mesocosm experiments simulating extreme climate events in lakes. Data in Brief DOI : 10.1016/j.dib.2023.109302

(2021)

Tran-Khac V, Perney, P, Crépin L, Quetin P. Domaizon I,  Jacquet S,  Espinat L, Gallot C, Rasconi S. 2021. Physico-chemical dataset from an in situ mesocosm experiment simulating extreme climate events in Lake Geneva (MESOLAC), Data in Brief,  36, 107150,
https://doi.org/10.1016/j.dib.2021.107150.

 

Ouvrage

(2023)

Les grands lacs à l'épreuve de l'anthropocène

Dorioz JM., Anneville O., Domaizon I., et al

Chapitre d'ouvrage

(2017)

-Domaizon I (2017)  Détection et quantification des cyanobactéries potentiellement toxiques en milieu lacustre. pp: 66-67.           

-Domaizon I., Debroas D. (2017) Réponses des micro-organismes lacustres aux pressions anthropiques et climatiques : une vaste diversité encore peu intégrée dans les études environnementales. pp:68-69.

Eds Ranjard L, Maron PA, Cuny P & d'Oiron Verame E. La microbiologie moléculaire service du diagnostic environnemental. 170p. ADEME Editions, Octobre 2017, France.  ISBN imprimé : 979-10-297-0485-7    ISBN numérique: 979-10-297-0486-4  

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(2016) C Lepère, I Domaizon,  D Debroas. Diversity and biogeography of Picoeukaryotes: New Insights into the rare biosphere. Chapter 19; 315-328; In Lake Pavin:History, geology, biogeochemistry, and sedimentology of a deep meromictic maar lake. Eds : T Sime-Ngando, ‎P Boivin, ‎E Chapron

D Jézéquel, M Meybeck, Springer, pp 419.DOI: 10.1007/978-3-319-39961-4;

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Articles de vulgarisation scientifique

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(2019)

Vasselon, F Rimet, I Domaizon, O Monnier, Y Reyjol, A BouchezÉvaluer la pollution des milieux aquatiques avec l’ADN des diatomées: où en sommes-nous?Techniques Sciences Méthodes, 5: 53-70. Ed. ASTEE

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(2017)  T. bouchez, Blieux AL, DequiedT, Domaizon I, et al. La microbiologie moléculaire au service du diagnostic environnemental. Etude et gestion des sols N°24(1).

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(2016) I Domaizon, F Arnaud, E Capo, D Debroas. L'ADN des archives sédimentaires : une opportunité unique de retracer les changements de biodiversité lacustre. 77-84. Eds, Ph Barral, M Magny, M Thiviet. De la reconstitution des paysages à l'histoire des sociétés - 10000 ans d'archives sédimentaires en zone humides. Gollion (CH) : InFolio editions, 2016, 288 pages.ISBN 978-2-88474-369-3

 

(2016) J P Jenny, F Arnaud, J.M. Dorioz, P Sabatier, I Domaizon, ME Perga. La reto-observation au service de la surveillance des écosystèmes lacustres actuels. 85-93. Eds, Ph Barral, M Magny, M Thiviet. De la reconstitution des paysages à l'histoire des sociétés - 10000 ans d'archives sédimentaires en zone humides. Gollion (CH) : InFolio editions, 2016, 288 pages.

 

(2014) I Gregory -Eaves & I Domaizon. Analysis of DNA archived in lake sediments. DOI: 10.4319/lol.2014.igregory-eaves.idomaizon.7 Conference: Limnol. Oceanogr. e-Lectures, Volume: Limnol. Oceanogr. e-Lectures Special Topics

 

​(2014) Dorioz JM & Domaizon I. Léman : carnet de santé. Nature & patrimoine en pays de Savoie. Juin 2014 n°43, 13-17

 

(2013) Montuelle B.,  O. Anneville,  A. Champigneulle, I. Domaizon, J.M. Dorioz, J. Guillard, S. Jacquet and M.E. Perga. Réponses de la biodiversité lacustre au changement global : variabilité à petite échelle et tendances à long terme. Innovations Agronomiques 23:3-18.

 

(2011) Jacquet S., Domaizon I., Masquelier S., Lepère C., Guillou L., Chambouvet A., Debroas D., Sime Ngando T  Virus, bactéries et protistes pathogens: Le rôle insoupçonné des parasites dans le fonctionnement des écosytèmes aquatiques. Courrier de l’environnement,60, 33-46

 

(2008) Domaizon I., Personnic S., Lepère C., Comte J., Mbade-Sene A., Dorigo U., Debroas D., Leberre B., Millery A., Avrilier J.N., Perney P., Jacquet S., 2008 - Les Réseaux trophiques microbiens : structure et facteurs de contrôle. Cas du lac du Bourget.  ‘Autour du lac du Bourget’ : les Editions de La page Blanche. p. 116-124.

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2016

  • Capo E., Debroas D. et al , Domaizon I (2016) Long-term dynamics in microbial eukaryotes communities: a paleolimnological view based on sedimentary DNA. Molecular Ecology ,25(23):5925-5943. DOI: 10.1111/mec.13893

  • Lepère C., Domaizon I., Debroas D. (2016) Diversity and biogeography of picoeukaryotes: New insights into rare biosphere. In Lake Pavin pp 315-328 DOI: 10.1007/978-3-319-39961-4_19

  • Bouchez T., . L Blieux, S. Dequiedt, I. Domaizon, et al.. 2016. Molecular microbiology methods for environmental diagnosis. Environmental Chemistry Letters,doi:10.1007/s10311-016-0581-3.

  • Lepere C., I. Domaizon, M. Hugoni, A. Vellet, D. Debroas. 2016. Diversity and dynamics of active small eukaryotes in the anoxic zone of a freshwater meromictic lake. Frontiers in microbiology, 7,130. DOI: 10.3389/fmicb.2016.00130

  • Bouvy M., Got P., I. Domaizon, Pagano M., Leboulanger C., Bouvier C., Carré C., Roques C., Dupuy C. 2016. Plankton communities in the five Iles Eparses (Western Indian Ocean)considered to be pristine ecosystems. Acta Oecologia, 72 :9-20.

  • Alric B., M. Möst, I. Domaizon, C. Pignol , P.  Spaak, ME. Perga. 2015. Local human pressures influence gene flow in a hybridizing Daphnia species complex. J of Evolutionary Biology. DOI: 10.1111/jeb.12820

  • Dupuy C., M. Pagano, P. Got, I. Domaizon, A. Chappuis, G. Marchessaux, M. Bouvy (2016) Trophic relationships between metazooplankton communities and their plankton food sources in the Iles Eparses (Western Indian Ocean). Marine Environmental Research, 116, 18-31

2015

  • Capo E., Debroas D., Arnaud F., Domaizon I (2015) . Is Planktonic diversity well recorded in sedimentary DNA? Toward the reconstruction of past protistan diversity. Microbial Ecology, 70(4):865-75. doi: 10.1007/s00248-015-0627-2.

  • Hugoni M., , H Agogué, N Taib, I Domaizon, A Moné, P E Galand, G Bronner, D Debroas, I Mary (2015) Temporal Dynamics of Active Prokaryotic Nitrifiers and Archaeal Communities from River to Sea. Microbial Ecology, 70(2), 473-483. DOI: 10.1007/s00248-015-0601-z

  • Perga ME, V Frossard, JP Jenny, B Alric, F Arnaud, V Berthon, J Black, I Domaizon, et al. (2015) High-resolution paleolimnology opens new management perspectives for lakes adaptation to climate warming. Frontiers in Ecology and Evolution, DOI: 10.3389/fevo.2015.00072.

  • Anneville O., Domaizon I., Rimet F. Jacquet S. (2015) . BlueGreen Algae in a ''Greenhouse Century''? New Insights from Field Data on Climate Change Impacts on Cyanobacteria Abundance. Ecosystems, 18, 441-458.DOI: 10.1007/s10021-014-9837-6

  • Billard E., Domaizon I., Tissot N., Arnaud F., Lyautey E. (2015) Multi-scale phylogenetic heterogeneity of archaea, bacteria, mathanogens and methanotrophs in lake sediments. Hydrobiologia, 751, 159-173. DOI 10.1007/s10750-015-2184-6

  • Taranu Z.E., Gregory-EavesI, Leavitt P.R., Bunting L, Buchaca T, Catalan J., Domaizon I., Guilizzoni P., Lami A., McGowan S., Moorhouse H., Morabito G., Pick F., Stevenson M.A.,  Thompson PL., R.D.Vinebrooke (2015)  Acceleration of cyanobacterial dominance in north temperate-subarctic lakes during the anthropocene. Ecology Letters, 18(4), 375-384. Doi: 10.1111/ele.12420

  • Debroas D, Hugoni M., Domaizon I  (2015) Evidence for an active rare biosphere within freshwater protists community. Molecular Ecology, 24, 1236-1247.

  • Hugoni M.,  I. Domaizon, N. Taib, C. Biderre‐Petit, H. Agogué, P. E. Galand, D. Debroas, I. Mary (2015) Temporal dynamics of active Archaea in oxygen depleted zones of two deep lakes. Environmental Microbiology reports, 7(2), 321-329. Doi:10.1111/1758-2229.12251

  • Pansu, J, Giguet-Covex C, Ficetola F Gielly L, Boyer, F, Coissac E, Domaizon I, Zinger L , Poulenard J, Arnaud F. 2016. Environmental DNA metabarcoding to investigate historic changes in biodiversity. Genome, 58(5), 264-264.

2014

 

  • Savichtcheva O., D Debroas, ME Perga, F Arnaud, E Lyautey, A Kirkham, C Chardon, B Alric, I Domaizon (2014) Effects of nutrients and warming on Planktothrix dynamics and diversity: a palaeolimnological view based on sedimentary DNA and RNA. Freshwater Biology. 60, 31–49. doi:10.1111/fwb.12465.

  • Sotton B, I Domaizon, O Anneville, F Cattanéo, J Guillard (2014) Nodularin and cylindrospermopsin: a review of their effects on fish. Reviews in Fish Biology and Fisheries DOI: 10.1007/s11160-014-9366-6

  • Rimet F., R Trobajo, DG Mann, L Kermarrec, A Franc, I Domaizon, A Bouchez. (2014) When is Sampling Complete? The Effects of Geographical Range and Marker Choice on Perceived Diversity in Nitzschia palea (Bacillariophyta). Protist 165 (3), 245-259.

  • Sotton B., Guillard J., Anneville O., Givaudan N., Savichtcheva O., Domaizon I. (2014) Trophic transfer of microcystins through the lake pelagic food web: evidence for the role of zooplankton as a vector in fish contamination. Science of the Total Environment 466–467 152–163.

  •  Jacquet S., Domaizon I., Rimet F.,  Anneville O. (2014) The need for ecological monitoring of freshwaters in a changing world: a case study of Lakes Annecy, Bourget and Geneva. Environmental Monitoring and Assessment, 186, 3455-3476..

  • Giguet-Covex C., Pansu J., Arnaud F., Rey P-J, Griggo C., Gielly L., Domaizon I., Coissac E., David F., Choler P., Poulenard J., P.Taberlet (2014) Long livestock farming history and human landscape shaping revealed by lake sediment DNA. Nature communnication. 5, 3211.

  • Domaizon I., Savichtcheva O., Debroas D., Arnaud F., Villar C., Pignol C., Alric B., Perga M.E. (2013) DNA lake sediments reveals the long-term dynamics and diversity of Synechococcus assemblages. Biogeosciences, 10, 3817-3838, 2013.

  • Taib N., Mangot JF, Domaizon I, Bronner G, Debroas D. (2013) Phylogenetic affiliation of SSU rRNA genes generated by massively parallel sequencing: new insigths into freshwater protist diversity. PLOsOne. 8(3): e58950.

  • Lepere C., Domaizon I., Taib N., Mangot J.F, Boucher D., Debroas D. (2013) Geographic distance and ecosystem size determine the distribution of smallest protists in lacustrine ecosystems. FEMS Microbiology Ecology, doi: 10.1111/1574-6941.12100.

  • Hugoni M., Etien S., Bourges A., Lepère C., Domaizon I., Mallet C., Debroas D., Mary I. (2013) Dynamics of ammonia-oxydizing Archaea and Bacteria in contrasted freshwater ecosystems. J Research in Microbiology, DOI:10.1016/j.resmic.2013.01.004.

  • Hugoni M., Taib N.., Debroas D., Domaizon I., Juan Dufournel I., Bronner G., Salter I., Agogué H., Mary I., Galand P.E. (2013) Structure of the rare archeal biosphere and seasonal dynamics of active ecotypes in surface coastal waters. PNAS, march 27,, doi: 10.1073/pnas.1216863110.

  • Jacquet, S., C. Chardon, S. Personnic and I. Domaizon. 2013. Are grazers and/or viruses structuring factors of the bacterial community in Lake Geneva? Advances in Microbiology 3(3), 233-248. DOI: 10.4236/aim.2013.33035 

  • Jacquet S, I. Domaizon, C. Chardon and S. Personnic (2013) "Are Small Grazers and/or Viruses a Structuring Factor of the Free-Living Bacterial Community in Lake Geneva?," Advances in Microbiology, Vol. 3 No. 3, 2013, pp. 233-248. doi: 10.4236/aim.2013.33035.

2013

2012

  • Domaizon I., Lepère C., Debroas D., Ghiglione J.F., Jacquet S., Bouvy M., Bettarel Y., Bouvier C., Torreton J.P., Vidussi F., Mostajir B., Kirkham A., LeFloch E., Fouilland E., Montanié H., Bouvier T. (2012) Short term responses of unicellular planktonic eukaryotes to increases in temperature and UVB radiation. BMC microbiology, 12:202.

  • Mangot JF, Domaizon I, Taib N., Bronner G, Debroas D. (2012) Short term dynamics of diversity patterns: evidence of continual reassembly within lacustrine small eukaryotes. Environ Microbiol 12/2012 , DOI: 10.1111/1462-2920.12065

  • Sotton B., Devaux A., Givaudan N., Guillard J., Domaizon I., Bony S., Anneville O. (2012) Short-term uptake of microcystin-LR by Coregonus lavaretus: GST activity and genotoxicity. Ecotoxicology, 21 (7) :1788-1796.

  • Perga, M.E, Domaizon, I., Guillard, J., Anneville, O. (2012) Cyanobacterial blooms: trophic dead-ends or unexpected dietary bonus.  Oecologia. DOI 10.1007/s00442-012-2519-1

  • Sotton B., Guillard J., Bony S., Devaux A., Domaizon I., Givaudan N., CreSpeau,F. Huet H., Anneville O. (2012) Impact of Toxic Cyanobacterial Blooms on Eurasian Perch (Perca fluviatilis): Experimental Study and In Situ Observations in a Peri-Alpine Lake. PLoS ONE 7(12): e52243. doi:10.1371/journal.pone.0052243.

2011

  • Savichtcheva O., Debroas D., Kurmayer R., Villar C., Jenny JP, Arnaud F, Perga ME, Domaizon I.  (2011) Quantitative PCR enumeration of total/toxic Plankthotrix rubescens and total Cyanobacteria in preserved DNA isolated from lake sediments. Applied Env. Microbiol. 77(24), p.8744-8752.

  • Mangot J.-F., Debroas D., Domaizon I. (2011) Perkinsozoa, a well-known marine protozoan flagellate parasite group, newly identified in lacustrine systems : a review. Hydrobiologia, 659,  37-48.

  • Berdjeb L., Ghiglione J.-F., Domaizon I., Jacquet S. (2011)  A 2-Year assessment of the main environmental factors driving the free-living bacterial community structure in Lake Bourget (France). Microb. Ecol., 61,  4,  941-954.

  • Berdjeb L., Pollet T., Domaizon I., Jacquet S. (2011)  Effect of grazers and viruses on bacterial community structure and production in two contrasting trophic lakes. BMC Microbiology, 11 : 88.

  • Bettarel Y., Bouvier T., Bouvier C., Carre C., Desnues A., Domaizon I., Jacquet S., Robin A., Sime-Ngando T. (2011) Ecological   traits of planktonic viruses and prokaryotes along a full-salinity gradient. FEMS Microbiol. Ecol., 76, p. 360-372.

  • Bouvy M., Bettarel Y., Bouvier C.  Domaizon I.,  Jacquet S., Le Floc'h E., Montanié H., Mostajir B., Sime-Ngando T., Torréton J. P., Vidussi F., Bouvier T. (2011) Trophic interactions between viruses and nanoflagellates under various nutrient conditions and simulated climate change. Environ. Microbiol., 13, 7, p. 1842-1857.

  • Parveen B., Reveilliez J.P., Mary I., Ravet V., Mangot J.F., Domaizon I., Debroas D. (2011) Diversity and dynamics of free-living and particle-associated Betaprotobacteria and Actinobacteria in relation to phytoplankton and zooplankton communities. FEMS Microbial Ecol. DOI:10.1111/j.1574-6941.2011.01130.x

  • Sotton B., Anneville O., Cadel-Six S., Domaizon I., Krys S., Guillard J. (2011) Daily distribution of whitefish during Planktothrix rubescens blooms in a mesotrophic peri-alpine lake, and evidence of toxins accumulation. Harmful Algae, 10(6), p.749-758.​

Conférences récentes

-Organisation Congrès & sessions spéciales

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(2019)

Sessions spéciales à congrès internationnaux

- Reconstructing adaptative responses in aquatic ecosystems using ancient DNA. ASLO Aquatic Sciences Meeting San Juan Puerto Rico.

(2018)

-Ecosystem goods and services and sustainable management for large lakes.  Big lakes Small World -  ELLS IAGLR  Evian France.

(2017)

-Ancient DNA for understanding past biodiversity, human history and drivers of ecossytem changes. Past Global Changes- Zaragoza Spain.

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-Organisation de colloques- Congrès

(2018) Membre du comité d’organisation Big Lakes Small World - Joint meeting ELLS IAGLR - Evian

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-Conférences invitées

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(2019)

-GDR Génomique environnementale - La Rochelle 2019: conférence plénière  

-Zagreb European Phycological Congress 2019: Ouverture session’ Algae in their ecosystems: novel approaches to study algal ecology’.

             

(2018)

-IPA – IAL 2018 Joint Meeting- Unravelling the Past and Future of Lakes - Stockholm Sweeden: conférence plénière

 

-Autres conférences 

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(2017)  Domaizon I., Capo E., Debroas D., et al.  Application of HTS on sedimentary DNA :new opportunities for investigating long-term dynamics of lacustrine biodiversity driven by local and global forcing factors. SIL-, Innsbruck Austria, 26-28 October 2017.

 

(2014)  I. Domaizon  Summer School of Limnology Evian :

- Application of DNA based methods in aquatic microbial ecology : probing diversity in microbial world.

-Application of DNA-tools for investigating past lacustrine diversity : Coupling between paleolimnology and DNA-based studies

 

 (2013)  I Domaizon et al.  Application of NGS for investigating modern and past diversity of planktonic taxa in lakes: toward a multi-scale temporal view of planktonic biodiversity and its forcing factors. DNA watch Frasnes oct 2013.

 

(2013) I Domaizon et al.  Microbial metagenetic approaches included in the Alpine Lake Observatory: DNA & RNA analyses for investigating modern and past planktonic diversity. GLEON meeting Argentine 2013.

 

 (2013) I Domaizon Coupling paleolimnology and molecular tools to reveal the long-term dynamics and diversity of planktonic assemblages: focus on diatoms and cyanobacteria. 7th Central European Diatoms Meeting. France 18-20 Sept 2013.

 

(2012) I. Domaizon,  et al.  Long term dynamics and diversity of freshwater picocyanobacteria : coupling molecular tools and paleolimnological approach. Intermational Paleolomnology Symposium Aout 2012 Glasgow -UK

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​(2012) O. Savichtcheva, B Sotton, O Anneville, J. Guillard, C.Villar, I. Domaizon. DNA based detection of toxic cyanobacteria Plankthotrix rubescens in Daphnia diet. Limnologia 2012 – 2/6 july - Guimaraes, Portugal

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2010

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2009

  • Lepere C., Masquelier S., Mangot J.-F., Debroas D., Domaizon I. (2010) Vertical structure of small eukaryotes in three lakes that differ by their trophic status : a quantitative approach ISME J., 4,  1509-1519.

  • Mangot J.-F., Lepère C., Bouvier C., Debroas D., Domaizon I. (2009) Community  structure and dynamics of small eukaryotes (<5 µm) targeted by new  oligonucleotide probes: a new insight into the lacustrine microbial  food web. Appl. Environ. Microbiol. 75 (19), 6373-6381.

  • Personnic S., Domaizon I., Dorigo U. Berdjeb L., Jacquet S. (2009) Seasonal and spatial variability of virio-, bacterio- and  picophytoplanktonic abundances in three peri-alpine lakes.  Hydrobiologia, 627 (1), 99-11.

  • Personnic S., Domaizon I., Sime-Ngando T., Jacquet S. (2009) Seasonal variations of microbial abundances and virus- vs. flagellate-induced mortality of picoplankton in three peri-alpine lakes. J. Plankton Res. 31(10), 1161-1177

​http://www.researchgate.net/profile/Isabelle_Domaizon2/

Avant

2009

Isabelle Domaizon

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